No.

Paper ID

Paper title

Authors

1

P001

Qualiseq: quality genomic sequence retrieval

Tz-chao Lin, Kuo-his Lee, Yan-hau Chen, Ming-fang Tsai, Adam Yao

2

P002

D-space: distributed sequence pattern capture engine

Hasegawa A, Konagaya A

3

P003

Metadata extraction from biological experimental data

Badr Al-Daihani, Alex Gray, Peter Kille

4

P004

Polymerase chain reaction amplification and molecular characterization of Pasteurella multocida species gene from cultural lysates of vaccine strain of Nepal

Banshi Sharma

5

P005

Global analysis of micro-RNA target gene expression reveals the potential roles of micro-RNA in maintaining tissue identity.

Zhenbao Yu, Zhaofeng Jian, Shi-Hsiang Shen, Enrico Purisima, Edwin Wang

6

P006

Enhanced structure prediction of gene products containing class iii adenylate cyclases

C.S. Reddy, A. Manonmani, M. Babu and R. Sowdhamini

7

P007

Discovery and characterization of novel transcription binding motifs in the promoters of primate eosinophil rnases

Chang HT, Chang YS, Chou WY, Pai TW, Chou WY, Lee YH, Chang MDT

8

P008

Detection of peroxisomal protein candidates using motif search, co-expression and promoter content

Marlis Herberth and Christian Schönbach

9

P009

Identification of genomic regions that are potentially involved in low-copy repeat mediated chromosome deletion/duplication

Chun-Ming Chen, Shaw-Jenq Tsai1,Ko-Fan Chen, Hsiang-Han Chan, H.Sunny Sun

10

P010

Hypoxia-regulated gene network and cell migration

Ko-Fan Chen, H. Sunny Sun, and Shaw-Jenq Tsai

11

P011

Lidaeus: a virtual screening program for drug discovery

Kan D, Taylor P, Walkinshaw MD

12

P012

Representation of Alternative Transcript Diversity in the human tissue kallikrein gene family using Splicing graphs

Durgaprasad Bollina, Shoba Ranganathan

13

P013

Kernel pls-svm for microarray cancer classification

Shen L, Tan EC

14

P014

A fuzzy expert system for the inference of antidepressants based on gene polymorphisms

Eugene Lin and Yuchi Hwang

15

P015

Comparative Modeling and Receptor based pharmacophore model development for pfemp1 protein of plasmodium falciparum

Niveditha M, Sowmiya D, Ragul G

16

P016

Comparative genome analysis of the cytophaga-flavobacteria-bacteroides (cfb) group species

Xie G, Brettin TS

17

P017

Metabolic control analysis for ehanced lycopene producion in escherichia coli

Woo HW, Lee SY

18

P018

Metafluxnet: platform for metabolic flux analysis of in silico genome-scale models

Woo HM, Lee D-Y, Choi HS, Kim TY, Yun H, Lee SY

19

P019

Determination of conserved genes based on the ortholog network

Hijiri Maeno, Misako Arai, Yoko Shinbo, MD. Altaf-Ul-Amin, Ken Kurokawa, Naotake Ogasawara AND Shigehiko Kanaya

20

P020

Phenotype microarray analysis of escherichia coli k-12 : in silico approach

Hiroaki Gobara, Baba Tomoya, Md. Altaf-Ul-Amin1, Masanori Arita, Kurokawa Ken, Shigehiko Kanaya, Hirotada Mori

21

P021

Detection of regulons based on integeration of gene expression profiles and promoter searches

H Kobayashi, J Akitomi, N Fujii, H Maeno, K Yamakura, MAU Amin, K Kurokawa, K Kobayashi, N Ogasawara and S Kanaya

22

P022

Sphsom: a toolkit for visualize intrinsic structure in high dimensional data space

Hirokazu Nishio, Md. Ultaf-Ul Amin, Ken Kurokawa, Shigehiko Kanaya

23

P023

Development of a new ab initio gene prediction system to reduce false positives

Hisataka Numa, Takeshi Itoh

24

P024

A modeling and simultion framework for in silico metabolic flux analysis

Hongseok Yun, Sang Yup Lee

25

P025

Identification of rna-binding protein residues using machine learning approaches

Jia-Je Li, Hsueh-Fen Juan, I-Fang Chung, Hsuan-Cheng Huang

26

P026

Topologial characteristics of protein interaction network and roles of essential genes in e. Coli k-12

Yih-Chii Hwang, Chen-Ching Lin, Hsueh-Fen Juan, Hirotada Mori, Hsuan-Cheng Huang

27

P027

Elucidating the essentiality of essential genes in e. Coli k-12

Yue-Yang Bow, Jen-Yun Chang1, Hsueh-Fen Juan, Hirotada Mori, Hsuan-Cheng Huang

28

P028

Bsip ¡V a web server for systems-biology structure identification program development

Chern-Han Ou, Chih-Chin Chang, Hung-Ching Hsia, Feng-Sheng Wang, Hsueh-Fen Juan, Hsuan-Cheng Huang

29

P029

Bioinformatics approach to study the correlation between gene expression profiles and protein-protein interactions using matrices

Nancy Lin, Shyh-Horng Chiou, Hsueh-Fen Juan, Hsuan-Cheng Huang

30

P030

Prediction of protein secondary structures by neural networks with combined information

Hui-Huang Hsu and Jian-Tsang Chang

31

P031

Automated prediction of bacterial replication origin (apbro)

I Hsuan Lin, Kuan-Bei Chen, Yu-Hsuan Lin, Chuan-Hsiung Chang

32

P032

Discovery of genes involved in DNA repair using phylogenetic profiles to compare genomes

Kristin Robertsen and Torbjorn Rognes

33

P033

Gene Interactions in a Social Setting: Identification of Relevant Gene Groups in Genomic Data

Jochen Brumm, Elizabeth Conibear1, Jenny Bryan, Wyeth Wasserman

34

P034

Sequence and structure analysis of avian influenza a hemagglutinin

Hsu, JW, Chan, CH, Kao, CY

35

P035

Evolutionary approach to identifying domain subtypes

Tajul-Arifin, K and Mattick, JS

36

P036

Parameter optimazation tequnique using the rsm and parameter space visualization for cardiac myocyte model

Koji Sakai, Koji Koyamada, Yukiko Yamashita, Nobuaki Sarai, Keiichi Asakura, Akinori Noma

37

P037

Development of a Prototype System for the Inference of Genetic Networks Based on Genetic Programming

Kouji TANAKA, Yutaka AKIYAMA, Hayato YAMANA

38

P038

Constrained multiple structure feature alignment(cmsfa) for unique peptide identification

Bo-Han Su, Tun-Wen Pai, Wen-Shyong Tzou

39

P039

Log linear algorithm for syntenic distance

Dunnett LJ, Litow B

40

P040

Intertest agreement of pathway discovery of five statistical methods commonly used in the analysis of dna microarrays

Liu XX, Loh M, Dong P, Mondry A

41

P041

Diagnostic performance of five statistical methods commonly used in the analysis of dna microarrays

Loh M, Liu XX, Dong P, Mondry A

42

P042

Data Envelopment Analysis Approach applied to Gene Expression Data

Masako Hoshino, Hiroshige Inazumi

43

P043

A pipeline for analysis of published abstracts for information on protein-protein inter-relations

Ling, MHT, Nicholas, KR, Lefèvre, C

44

P044

Structural analysis, discrimination of ƒÒ-barrel membrane proteins and prediction of their membrane spanning segments

M. Michael Gromiha, Shandar Ahmad and Makiko Suwa

45

P045

Gene classification for Arabidopsis thaliana based on expression profiles utilized by 1000 genechip

Munehide Itoyama, Hirokazu Kobayashi, Md. Altaf-Ul-Amin, Ken Kurokawa, Shigehiko Kanaya

46

P046

Bootstrap confidence levels for full sibship reconstruction

Bajema N, Konovalov DA, Litow B

47

P047

Leucine-rich repeat (lrr) variants in proteins associated with human diseases

Norio Matsushima, Purevjav Enkhbayar, Mitsuru Osaki

48

P048

Structural features of a-helices in proteins revealed by new helix fitting method

Purevjav Enkhbayar, Mitsuru Osaki ¡BNorio Matsushima

49

P049

Spip ¡V sh2 domain-protein interaction predictor

Rajasekaran M., Suresh Kumar R

50

P050

Genomic organization of highly conserved non-coding sequences is similar in metazoan genomes

Ho Sui SJ, Sandelin A, Lenhard B, Wasserman WW

51

P051

Pspml: physiological simulation protocol markup language

Shimayoshi T, Amano A, Matsuda T

52

P052

Bioinformatic Discovery of micrornas and Their Target Genes from Human ests and Introns

Sung-Chou Li, Wen-Chang Lin

53

P053

Comparative and in silico metabolic engineering to drive anaerobic fermentative flux to succinic acid in Escherichia coli

Tae Yong KIM, Dong-Yup LEE, Sang Jun LEE, and Sang Yup LEE

54

P054

Nebir ¡V an nlp-enabled biomedical information retrieval system

Tsai TH, Wu CW, Hung HC, He D, Sung TY, Hsu WL

55

P055

A knowledge-based natureal language query method for search on human genetic mutation

Wei Qu, David Feng

56

P056

Improved pairwise alignment of proteins in the twilight zone using local structure predictions

Yao-ming Huang and Christopher Bystroff

57

P057

Search Tool for Relationship between Metabolites and Species

Yoko Shinbo, Yukiko Nakamura, Hiroko Asahi, Md.Altaf-Ul-Amin, Ken Kurokawa, Hirokazu Kobayashi, Masayoshi Wada, Shunichi Sakaguchi, Kazuaki Natsuhara, Toshiaki Tokimatsu, Masanori Arita and Shigehiko Kanaya

58

P058

Dynamic sensitivity analysis of complex biochemical oscillation networks using a modified collocation method

Ming-Laing Chen and Feng-Sheng Wang

59

P059

Inference of genetic networks using evolutionary multi-objective optimization approach

Pang-Kai Liu and Feng-Sheng Wang

60

P060

Learning genic interaction using markov model

Chia-Wei Wu, Tzong-Han Tsai, Cheng-Pu Sun, Wen-Lian Hsu

61

P061

Scaling behavior of maximal repeat distributions in gemome sequences

Wang J.D., Liu Hsiang-Chuan, Ng Ka-Lok

62

P062

Topological stability of the protein-protein interaction networks

Huang Chien-Hung, Tsai J.F., Fang Jywe-Fei, Ng Ka-Lok

63

P063

Large scale prediction of domain-domain interactions from protein-protein interactions

Lee Jeng-ru, Liu Hsiang-Chuan, Tsai J.F, Ng Ka-Lok

64

P064

V-mitosnp: visualization of mitochondrial snp

Gu D-L, Cheng Y-H, Yang C-H, Chang P-L, Chuang L-Y, Chang H-W

65

P065

Motif constituents in the yeast protein interaction network discovered through the asymmetric functional annotation

Wei-Yao Chou, Tun-Wen Pai, Wei-Yuan Chang, Wen-Shyong Tzou

66

P066

Apply genetic algorithms and neural networks to seldi proteomic data for prostate cancer detection

Lin TC, Liu RS, Chen SY,Hwang JI, Chao YT

67

P067

Fly-DPI, Database of Protein Interactomes for Drosophila melanogaster: A framework of experimental and putative interactions

Chung-Yen Lin, Chi-Shiang Cho, Chia-Ling Chen, Fan-Kai Lin, Chieh-Hua Lin, Pao-Yang Chen, Shu-Hwa Chen, Chen-Zen Lo and Chao A. Hsiung

68

P068

MOLAS : microarray On Line Analysis System, A web platform for massive data management and analysis

Chung-Yen Lin, Wei-Chen Chen, Yueng-Shiang Huang, and, Chao A. Hsiung

69

P069

Potential electrophysiologic interactions between ik(atp) activation and ikr blockade in patients with ischemic heart disease: a simulation study

Chang HD, Wu SN, Wu JS, Sung RJ

70

P070

Gene Structure Assembly through Analysis of Large-Scale ests

Fang-Rong Hsu, Jiun-Tang You, and W. C. Shia

71

P071

Non-arbitrary judgment algorithm for periodicity of time series data

Tominaga D, Horton P

72

P072

Primerz: A Web-Based Primer Design Tool for Exons and Promoters of a Gene

Kuo-Hsi Lee, Ming-Fang TsaiI, Adam Yao

73

P073

Correlation among gene density, recombination rate and te distribution in rice genome

Ya-Ting Chao, Yao-Cheng Lin, Hui-Ling Cheng, Ru-Sheng Liu, Shu-Yuan Chen, Hsing, Yue-Ie Caroline

74

P074

Affyrmation: A SNP affirmation and visualization Tool for Affymetrix DNA chip

Yan-Hau Chen, Ming-Fang Tsai, Adam Yao

75

P075

Identifying the functions of genes by a computational approach: Rosetta stone method used to discover genes involved in DNA repair

Inger Solberg and Torbjorn Rognes

76

P076

Transformation and Optimization of Pyruvate Branches in Metabolic Pathways of Lactococcus lactis

Hui- Hsin Yu, I-Fang Chung, Feng-Sheng Wang

77

P077

Evolution of hepatitis B virus in an acute hepatitis B patient co-infected with genotypes B and C

Bing-Fang Chen,Chun-Jen Liu,Guey-Mei Jow,Pei-Jer Chen,Jia-Horng Kao,and Ding-Shinn Chen

78

P078

An analysis of h5n1 influenza a virus hemagglutinin

Chen YJ , Chu HT

79

P079

Group Feature Extraction from Multiple Indexing Sequence Alignment

Wei-Yao Chou, Tun-Wen Pai, Wei-Yuan Chang, Wen-Shyong Tzou

80

P080

Identify disease associated genes by literature mining

Hsin-Ta Wu, Jung-Hsien Chiang, Ueng-Cheng Yang