NYMU

Bioinformatics Research Center, NYMU

  Bioinfo Support

SARS genome sequence
updated on 03/10/2003
¡@
SARS genome map
updated on 03/10/2003
¡@
SARS proteins
updated on 03/10/2003
¡@
SARS-related literatures
updated on 03/10/2003

 

SARS Working Group @ National Yang-Ming University, Taiwan
 News | Members | Progress | Resources | Forum | Contact

Info on  Genome Sequences


(1) 83 Complete SARS Genome: [GenBank Format],  [FAST Format].


(2) List of all the SARS virus genome sequences in GenBank:
¡@

#

Date

Version

C/P

Sequence description

GenBank format

FASTA format

Length

Reference

1

16-APR-2003

AY269391.1

P

SARS coronavirus Vietnam strain 200300592 polymerase gene, partial

405 bp

2

20-APR-2003

AY268049.1

P

SARS coronavirus Taiwan RNA-directed RNA polymerase (pol) gene,

433 bp

3

01-MAY-2003

AY278488.2

C

SARS coronavirus BJ01, complete genome.

29725 bp

4

10-MAY-2003

AY271716.1

P

SARS coronavirus Tor2 RNA polymerase 1b mRNA, partial cds.

158 bp

5

25-FEB-2004

AY291451.1

C

SARS coronavirus TW1, complete genome.

29729 bp

6

16-MAY-2003

AY274119.3

C

SARS coronavirus TOR2, complete genome.

29751 bp

7

19-MAY-2003

AY286402.1

P

SARS coronavirus Taiwan JC-2003 RNA-directed RNA polymerase (pol)

368 bp

8

19-MAY-2003

AY297028.1

C

SARS coronavirus ZJ01, complete genome.

29715 bp

9

05-JUN-2003

AY278487.3

C

SARS coronavirus BJ02, complete genome.

29745 bp

10

05-JUN-2003

AY278490.3

C

SARS coronavirus BJ03, complete genome.

29740 bp

11

05-JUN-2003

AY279354.2

P

SARS coronavirus BJ04, complete genome.

29732 bp

12

09-JUN-2003

AY307165.1

C

SARS coronavirus nucleocapsid protein (NP) gene, complete cds.

1269 bp

13

11-JUN-2003

AY291315.1

C

SARS coronavirus Frankfurt 1, complete genome.

29727 bp

14

24-JUN-2003

AY323974.1

C

SARS coronavirus ZJ01 membrane glycoprotein M mRNA, complete cds.

666 bp

15

24-JUN-2003

AY323975.1

C

SARS coronavirus ZJ01 small envelope E protein mRNA, complete cds.

231 bp

16

24-JUN-2003

AY323976.1

C

SARS coronavirus ZJ01 spike glycoprotein mRNA, complete cds.

3768 bp

17

26-JUN-2003

AY321118.1

C

SARS coronavirus TWC, complete genome.

29725 bp

18

21-JUL-2003

AY322208.1

C

SARS coronavirus Shanhgai LY Orf7a gene, partial cds; and Orf7b,

1706 bp

19

21-JUL-2003

AY322205.1

P

SARS coronavirus Shanhgai LY orf1ab polyprotein and orf1a

1706 bp

20

21-JUL-2003

AY322206.1

P

SARS coronavirus Shanhgai LY orf1a polyprotein and orf1ab

10546 bp

21

21-JUL-2003

AY322207.1

P

SARS coronavirus Shanhgai LY orf1ab polyprotein gene, partial cds;

4673 bp

22

21-JUL-2003

AY322208.1

C

SARS coronavirus Shanhgai LY Orf7a gene, partial cds; and Orf7b,

2304 bp

23

28-JUL-2003

AY338174.1

C

SARS coronavirus Taiwan TC1, complete genome.

29573 bp

24

28-JUL-2003

AY338175.1

C

SARS coronavirus Taiwan TC2, complete genome.

29573 bp

25

29-JUL-2003

AY348314.1

C

SARS coronavirus Taiwan TC3, complete genome.

29573 bp

26

31-JUL-2003

AY278554.2

C

SARS coronavirus CUHK-W1, complete genome.

29736 bp

27

02-AUG-2003

AP006557.1

C

SARS coronavirus TWH genomic RNA, complete genome.

29727 bp

28

02-AUG-2003

AP006558.1

C

SARS coronavirus TWJ genomic RNA, complete genome.

29725 bp

29

02-AUG-2003

AP006559.1

C

SARS coronavirus TWK genomic RNA, complete genome.

29727 bp

30

02-AUG-2003

AP006560.1

C

SARS coronavirus TWS genomic RNA, complete genome.

29727 bp

31

02-AUG-2003

AP006561.1

C

SARS coronavirus TWY genomic RNA, complete genome.

29727 bp

32

03-AUG-2003

AY351680.1

C

SARS coronavirus ZMY 1, complete genome.

29749 bp

33

09-AUG-2003

AY340092.1

P

SARS coronavirus BJ2232 RNA polymerase gene, partial cds.

368 bp

34

12-AUG-2003

AY278741.1

C

SARS coronavirus Urbani, complete genome.

29727 bp

35

12-AUG-2003

AY268070.1

C

SARS coronavirus Hong Kong/03/2003 RNA-directed RNA polymerase

646 bp

36

12-AUG-2003

AY283794.1

C

SARS coronavirus Sin2500, complete genome.

29711 bp

37

12-AUG-2003

AY283795.1

C

SARS coronavirus Sin2677, complete genome.

29705 bp

38

12-AUG-2003

AY283796.1

C

SARS coronavirus Sin2679, complete genome.

29711 bp

39

12-AUG-2003

AY283797.1

C

SARS coronavirus Sin2748, complete genome.

29706 bp

40

13-AUG-2003

AY362698.1

C

SARS coronavirus TWC2, complete genome.

29727 bp

41

13-AUG-2003

AY362699.1

C

SARS coronavirus TWC3, complete genome.

29727 bp

42

18-AUG-2003

AY278489.2

C

SARS coronavirus GD01, complete genome.

29757 bp

43

29-AUG-2003

AY278491.2

C

SARS coronavirus HKU-39849, complete genome.

29742 bp

44

02-SEP-2003

AY360146.1

C

SARS coronavirus HPZ-2003 nucleocapsid protein (NP) gene, complete

1269 bp

45

02-OCT-2003

AY283798.2

C

SARS coronavirus Sin2774, complete genome.

29711 bp

46

15-OCT-2003

AY323977.2

C

SARS coronavirus HSR 1, complete genome.

29751 bp

47

21-OCT-2003

AY427439.1

C

SARS coronavirus AS, complete genome.

29711 bp

48

03-NOV-2003

AY429072.1

C

SARS coronavirus BJ302 clone 1 spike glycoprotein gene, complete

3768 bp

49

03-NOV-2003

AY429073.1

C

SARS coronavirus BJ302 clone 2 spike glycoprotein gene, complete

3768 bp

50

03-NOV-2003

AY429074.1

C

SARS coronavirus BJ302 clone 3 spike glycoprotein gene, complete

3768 bp

51

03-NOV-2003

AY429075.1

C

SARS coronavirus BJ302 clone 4 spike glycoprotein gene, complete

3768 bp

52

03-NOV-2003

AY429076.1

C

SARS coronavirus BJ302 clone 5 spike glycoprotein gene, complete

3768 bp

53

03-NOV-2003

AY429077.1

C

SARS coronavirus BJ302 clone 6 spike glycoprotein gene, complete

3768 bp

54

03-NOV-2003

AY429078.1

C

SARS coronavirus BJ302 clone 7 spike glycoprotein gene, complete

3768 bp

55

03-NOV-2003

AY429079.1

C

SARS coronavirus BJ302 clone 8 spike glycoprotein gene, complete

3768 bp

56

05-NOV-2003

AY304486.1

C

SARS coronavirus SZ3, complete genome.

29741 bp

57

05-NOV-2003

AY304487.1

P

SARS coronavirus SZ13, partial genome.

8581 bp

58

05-NOV-2003

AY304488.1

C

SARS coronavirus SZ16, complete genome.

29731 bp

59

05-NOV-2003

AY304489.1

P

SARS coronavirus SZ1, partial genome.

8439 bp

60

05-NOV-2003

AY304490.1

P

SARS coronavirus GZ43, partial genome.

13471 bp

61

05-NOV-2003

AY304491.1

P

SARS coronavirus GZ60, partial genome.

11006 bp

62

05-NOV-2003

AY304492.1

P

SARS coronavirus HKU-36871, partial genome.

13471 bp

63

05-NOV-2003

AY304493.1

P

SARS coronavirus HKU-65806, partial genome.

11010 bp

64

05-NOV-2003

AY304494.1

P

SARS coronavirus HKU-66078, partial genome.

11010 bp

65

05-NOV-2003

AY304495.1

C

SARS coronavirus GZ50, complete genome.

29720 bp

66

17-NOV-2003

AY350750.1

C

SARS coronavirus PUMC01, complete genome.

29738 bp

67

17-NOV-2003

AY357075.1

C

SARS coronavirus PUMC02, complete genome.

29738 bp

68

17-NOV-2003

AY357076.1

C

SARS coronavirus PUMC03, complete genome.

29745 bp

69

17-NOV-2003

AY282752.2

C

SARS coronavirus CUHK-Su10, complete genome.

29736 bp

70

29-NOV-2003

AY345986.1

C

SARS coronavirus CUHK-AG01, complete genome.

29736 bp

71

29-NOV-2003

AY345987.1

C

SARS coronavirus CUHK-AG02, complete genome.

29736 bp

72

29-NOV-2003

AY345988.1

C

SARS coronavirus CUHK-AG03, complete genome.

29736 bp

73

30-NOV-2003

AY485277.1

C

SARS coronavirus Sino1-11, complete genome.

29741 bp

74

30-NOV-2003

AY485278.1

C

SARS coronavirus Sino3-11, complete genome.

29740 bp

75

23-NOV-2003

AY461660.1

C

SARS coronavirus SoD, complete genome.

29715 bp

76

23-NOV-2003

AY465926.1

P

SARS coronavirus isolate Xiao Tang Shang Hospital polyprotein

297 bp

77

23-NOV-2003

AY465927.1

P

SARS coronavirus isolate 309th Hospital polyprotein 1ab-like gene,

310 bp

78

09-DEC-2003

AY444813.1

C

SARS coronavirus Urbani ORF8 protein gene, complete cds.

369 bp

79

12-DEC-2003

AY310120.1

C

SARS coronavirus FRA, complete genome.

29740 bp

80

15-DEC-2003

AY313906.1

C

SARS coronavirus GD69, complete genome.

29754 bp

81

01-JAN-2004

AY365036.1

C

SARS coronavirus HB nucleocapsid protein (NP) gene, complete cds.

1269 bp

82

05-JAN-2004

AY463060.1

C

SARS coronavirus ShanghaiQXC2, complete genome.

29013 bp

83

05-JAN-2004

AY463059.1

C

SARS coronavirus ShanghaiQXC1, complete genome.

29592 bp

84

25-FEB-2004

AY502923.1

C

SARS coronavirus TW10, complete genome.

29729 bp

85

25-FEB-2004

AY502924.1

C

SARS coronavirus TW11, complete genome.