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SARS genome sequence
updated on 03/10/2003
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SARS genome map
updated on 03/10/2003
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SARS proteins
updated on 03/10/2003
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updated on 03/10/2003

 

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Info on  Genome Sequences


(1) 83 Complete SARS Genome: [GenBank Format],  [FAST Format].


(2) List of all the SARS virus genome sequences in GenBank:
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#

Date

Version

C/P

Sequence description

GenBank format

FASTA format

Length

Reference

1

16-APR-2003

AY269391.1

P

SARS coronavirus Vietnam strain 200300592 polymerase gene, partial

405 bp

2

20-APR-2003

AY268049.1

P

SARS coronavirus Taiwan RNA-directed RNA polymerase (pol) gene,

433 bp

3

01-MAY-2003

AY278488.2

C

SARS coronavirus BJ01, complete genome.

29725 bp

4

10-MAY-2003

AY271716.1

P

SARS coronavirus Tor2 RNA polymerase 1b mRNA, partial cds.

158 bp

5

25-FEB-2004

AY291451.1

C

SARS coronavirus TW1, complete genome.

29729 bp

6

16-MAY-2003

AY274119.3

C

SARS coronavirus TOR2, complete genome.

29751 bp

7

19-MAY-2003

AY286402.1

P

SARS coronavirus Taiwan JC-2003 RNA-directed RNA polymerase (pol)

368 bp

8

19-MAY-2003

AY297028.1

C

SARS coronavirus ZJ01, complete genome.

29715 bp

9

05-JUN-2003

AY278487.3

C

SARS coronavirus BJ02, complete genome.

29745 bp

10

05-JUN-2003

AY278490.3

C

SARS coronavirus BJ03, complete genome.

29740 bp

11

05-JUN-2003

AY279354.2

P

SARS coronavirus BJ04, complete genome.

29732 bp

12

09-JUN-2003

AY307165.1

C

SARS coronavirus nucleocapsid protein (NP) gene, complete cds.

1269 bp

13

11-JUN-2003

AY291315.1

C

SARS coronavirus Frankfurt 1, complete genome.

29727 bp

14

24-JUN-2003

AY323974.1

C

SARS coronavirus ZJ01 membrane glycoprotein M mRNA, complete cds.

666 bp

15

24-JUN-2003

AY323975.1

C

SARS coronavirus ZJ01 small envelope E protein mRNA, complete cds.

231 bp

16

24-JUN-2003

AY323976.1

C

SARS coronavirus ZJ01 spike glycoprotein mRNA, complete cds.

3768 bp

17

26-JUN-2003

AY321118.1

C

SARS coronavirus TWC, complete genome.

29725 bp

18

21-JUL-2003

AY322208.1

C

SARS coronavirus Shanhgai LY Orf7a gene, partial cds; and Orf7b,

1706 bp

19

21-JUL-2003

AY322205.1

P

SARS coronavirus Shanhgai LY orf1ab polyprotein and orf1a

1706 bp

20

21-JUL-2003

AY322206.1

P

SARS coronavirus Shanhgai LY orf1a polyprotein and orf1ab

10546 bp

21

21-JUL-2003

AY322207.1

P

SARS coronavirus Shanhgai LY orf1ab polyprotein gene, partial cds;

4673 bp

22

21-JUL-2003

AY322208.1

C

SARS coronavirus Shanhgai LY Orf7a gene, partial cds; and Orf7b,

2304 bp

23

28-JUL-2003

AY338174.1

C

SARS coronavirus Taiwan TC1, complete genome.

29573 bp

24

28-JUL-2003

AY338175.1

C

SARS coronavirus Taiwan TC2, complete genome.

29573 bp

25

29-JUL-2003

AY348314.1

C

SARS coronavirus Taiwan TC3, complete genome.

29573 bp

26

31-JUL-2003

AY278554.2

C

SARS coronavirus CUHK-W1, complete genome.

29736 bp

27

02-AUG-2003

AP006557.1

C

SARS coronavirus TWH genomic RNA, complete genome.

29727 bp

28

02-AUG-2003

AP006558.1

C

SARS coronavirus TWJ genomic RNA, complete genome.

29725 bp

29

02-AUG-2003

AP006559.1

C

SARS coronavirus TWK genomic RNA, complete genome.

29727 bp

30

02-AUG-2003

AP006560.1

C

SARS coronavirus TWS genomic RNA, complete genome.

29727 bp

31

02-AUG-2003

AP006561.1

C

SARS coronavirus TWY genomic RNA, complete genome.

29727 bp

32

03-AUG-2003

AY351680.1

C

SARS coronavirus ZMY 1, complete genome.

29749 bp

33

09-AUG-2003

AY340092.1

P

SARS coronavirus BJ2232 RNA polymerase gene, partial cds.

368 bp

34

12-AUG-2003

AY278741.1

C

SARS coronavirus Urbani, complete genome.

29727 bp

35

12-AUG-2003

AY268070.1

C

SARS coronavirus Hong Kong/03/2003 RNA-directed RNA polymerase

646 bp

36

12-AUG-2003

AY283794.1

C

SARS coronavirus Sin2500, complete genome.

29711 bp

37

12-AUG-2003

AY283795.1

C

SARS coronavirus Sin2677, complete genome.

29705 bp

38

12-AUG-2003

AY283796.1

C

SARS coronavirus Sin2679, complete genome.

29711 bp

39

12-AUG-2003

AY283797.1

C

SARS coronavirus Sin2748, complete genome.

29706 bp

40

13-AUG-2003

AY362698.1

C

SARS coronavirus TWC2, complete genome.

29727 bp

41

13-AUG-2003

AY362699.1

C

SARS coronavirus TWC3, complete genome.

29727 bp

42

18-AUG-2003

AY278489.2

C

SARS coronavirus GD01, complete genome.

29757 bp

43

29-AUG-2003

AY278491.2

C

SARS coronavirus HKU-39849, complete genome.

29742 bp

44

02-SEP-2003

AY360146.1

C

SARS coronavirus HPZ-2003 nucleocapsid protein (NP) gene, complete

1269 bp

45

02-OCT-2003

AY283798.2

C

SARS coronavirus Sin2774, complete genome.

29711 bp

46

15-OCT-2003

AY323977.2

C

SARS coronavirus HSR 1, complete genome.

29751 bp

47

21-OCT-2003

AY427439.1

C

SARS coronavirus AS, complete genome.

29711 bp

48

03-NOV-2003

AY429072.1

C

SARS coronavirus BJ302 clone 1 spike glycoprotein gene, complete

3768 bp

49

03-NOV-2003

AY429073.1

C

SARS coronavirus BJ302 clone 2 spike glycoprotein gene, complete

3768 bp

50

03-NOV-2003

AY429074.1

C

SARS coronavirus BJ302 clone 3 spike glycoprotein gene, complete

3768 bp

51

03-NOV-2003

AY429075.1

C

SARS coronavirus BJ302 clone 4 spike glycoprotein gene, complete

3768 bp

52

03-NOV-2003

AY429076.1

C

SARS coronavirus BJ302 clone 5 spike glycoprotein gene, complete

3768 bp

53

03-NOV-2003

AY429077.1

C

SARS coronavirus BJ302 clone 6 spike glycoprotein gene, complete

3768 bp

54

03-NOV-2003

AY429078.1

C

SARS coronavirus BJ302 clone 7 spike glycoprotein gene, complete

3768 bp

55

03-NOV-2003

AY429079.1

C

SARS coronavirus BJ302 clone 8 spike glycoprotein gene, complete

3768 bp

56

05-NOV-2003

AY304486.1

C

SARS coronavirus SZ3, complete genome.

29741 bp

57

05-NOV-2003

AY304487.1

P

SARS coronavirus SZ13, partial genome.

8581 bp

58

05-NOV-2003

AY304488.1

C

SARS coronavirus SZ16, complete genome.

29731 bp

59

05-NOV-2003

AY304489.1

P

SARS coronavirus SZ1, partial genome.

8439 bp

60

05-NOV-2003

AY304490.1

P

SARS coronavirus GZ43, partial genome.

13471 bp

61

05-NOV-2003

AY304491.1

P

SARS coronavirus GZ60, partial genome.

11006 bp

62

05-NOV-2003

AY304492.1

P

SARS coronavirus HKU-36871, partial genome.

13471 bp

63

05-NOV-2003

AY304493.1

P

SARS coronavirus HKU-65806, partial genome.

11010 bp

64

05-NOV-2003

AY304494.1

P

SARS coronavirus HKU-66078, partial genome.

11010 bp

65

05-NOV-2003

AY304495.1

C

SARS coronavirus GZ50, complete genome.

29720 bp

66

17-NOV-2003

AY350750.1

C

SARS coronavirus PUMC01, complete genome.

29738 bp

67

17-NOV-2003

AY357075.1

C

SARS coronavirus PUMC02, complete genome.

29738 bp

68

17-NOV-2003

AY357076.1

C

SARS coronavirus PUMC03, complete genome.

29745 bp

69

17-NOV-2003

AY282752.2

C

SARS coronavirus CUHK-Su10, complete genome.

29736 bp

70

29-NOV-2003

AY345986.1

C

SARS coronavirus CUHK-AG01, complete genome.

29736 bp

71

29-NOV-2003

AY345987.1

C

SARS coronavirus CUHK-AG02, complete genome.

29736 bp

72

29-NOV-2003

AY345988.1

C

SARS coronavirus CUHK-AG03, complete genome.

29736 bp

73

30-NOV-2003

AY485277.1

C

SARS coronavirus Sino1-11, complete genome.

29741 bp

74

30-NOV-2003

AY485278.1

C

SARS coronavirus Sino3-11, complete genome.

29740 bp

75

23-NOV-2003

AY461660.1

C

SARS coronavirus SoD, complete genome.

29715 bp

76

23-NOV-2003

AY465926.1

P

SARS coronavirus isolate Xiao Tang Shang Hospital polyprotein

297 bp

77

23-NOV-2003

AY465927.1

P

SARS coronavirus isolate 309th Hospital polyprotein 1ab-like gene,

310 bp

78

09-DEC-2003

AY444813.1

C

SARS coronavirus Urbani ORF8 protein gene, complete cds.

369 bp

79

12-DEC-2003

AY310120.1

C

SARS coronavirus FRA, complete genome.

29740 bp

80

15-DEC-2003

AY313906.1

C

SARS coronavirus GD69, complete genome.

29754 bp

81

01-JAN-2004

AY365036.1

C

SARS coronavirus HB nucleocapsid protein (NP) gene, complete cds.

1269 bp

82

05-JAN-2004

AY463060.1

C

SARS coronavirus ShanghaiQXC2, complete genome.

29013 bp

83

05-JAN-2004

AY463059.1

C

SARS coronavirus ShanghaiQXC1, complete genome.

29592 bp

84

25-FEB-2004

AY502923.1

C

SARS coronavirus TW10, complete genome.

29729 bp

85

25-FEB-2004

AY502924.1

C

SARS coronavirus TW11, complete genome.

29727 bp

86

25-FEB-2004

AY502925.1

C

SARS coronavirus TW2, complete genome.

29729 bp

87

25-FEB-2004

AY502926.1

C

SARS coronavirus TW3, complete genome.

29729 bp

88

25-FEB-2004

AY502927.1

C

SARS coronavirus TW4, complete genome.

29729 bp

89

25-FEB-2004

AY502928.1

C

SARS coronavirus TW5, complete genome.

29729 bp

90

25-FEB-2004

AY502929.1

C

SARS coronavirus TW6, complete genome.

29729 bp

91

25-FEB-2004

AY502930.1

C

SARS coronavirus TW7, complete genome.

29729 bp

92

25-FEB-2004

AY502931.1

C

SARS coronavirus TW8, complete genome.

29729 bp

93

25-FEB-2004

AY502932.1

C

SARS coronavirus TW9, complete genome.

29729 bp

94

12-JAN-2004

AY394850.2

C

SARS coronavirus WHU, complete genome.

29728 bp

95

17-JAN-2004

AY508724.1

C

SARS coronavirus NS-1, complete genome.

29732 bp

96

29-JAN-2004

AY394977.1

P

SARS coronavirus GZ-A, partial genome.

29433 bp

97

29-JAN-2004

AY394978.1

C

SARS coronavirus GZ-B, complete genome.

29640 bp

98

29-JAN-2004

AY394979.1

C

SARS coronavirus GZ-C, complete genome.

29645 bp

99

29-JAN-2004

AY394980.1

P

SARS coronavirus GZ-D, partial genome.

29705 bp

100

29-JAN-2004

AY394981.1

P

SARS coronavirus HGZ8L1-A, partial genome.

29726 bp

101

29-JAN-2004

AY394982.1

P

SARS coronavirus HGZ8L1-B, partial genome.

29646 bp

102

29-JAN-2004

AY394983.1

C

SARS coronavirus HSZ2-A, complete genome.

29699 bp

103

29-JAN-2004

AY394984.1

P

SARS coronavirus HSZ-A, partial genome.

29733 bp

104

29-JAN-2004

AY394985.1

C

SARS coronavirus HSZ-Bb, complete genome.

29530 bp

105

29-JAN-2004

AY394986.1

C

SARS coronavirus HSZ-Cb, complete genome.

29729 bp

106

29-JAN-2004

AY394987.1

C

SARS coronavirus HZS2-Fb, complete genome.

29709 bp

107

29-JAN-2004

AY394988.1

P

SARS coronavirus JMD, partial genome.

29665 bp

108

29-JAN-2004

AY394989.1

C

SARS coronavirus HZS2-D, complete genome.

29736 bp

109

29-JAN-2004

AY394990.1

C

SARS coronavirus HZS2-E, complete genome.

29736 bp

110

29-JAN-2004

AY394991.1

C

SARS coronavirus HZS2-Fc, complete genome.

29736 bp

111

29-JAN-2004

AY394992.1

C

SARS coronavirus HZS2-C, complete genome.

29736 bp

112

29-JAN-2004

AY394993.1

C

SARS coronavirus HGZ8L2, complete genome.

29736 bp

113

29-JAN-2004

AY394994.1

C

SARS coronavirus HSZ-Bc, complete genome.

29765 bp

114

29-JAN-2004

AY394995.1

C

SARS coronavirus HSZ-Cc, complete genome.

29765 bp

115

29-JAN-2004

AY394996.1

C

SARS coronavirus ZS-B, complete genome.

29683 bp

116

29-JAN-2004

AY394997.1

C

SARS coronavirus ZS-A, complete genome.

29683 bp

117

29-JAN-2004

AY394998.1

C

SARS coronavirus LC1, complete genome.

29736 bp

118

29-JAN-2004

AY394999.1

C

SARS coronavirus LC2, complete genome.

29350 bp

119

29-JAN-2004

AY395000.1

C

SARS coronavirus LC3, complete genome.

29350 bp

120

29-JAN-2004

AY395001.1

C

SARS coronavirus LC4, complete genome.

29350 bp

121

29-JAN-2004

AY395002.1

C

SARS coronavirus LC5, complete genome.

29350 bp

122

29-JAN-2004

AY395003.1

C

SARS coronavirus ZS-C, complete genome.

29647 bp

123

29-JAN-2004

AY395004.1

P

SARS coronavirus HZS2-Bb, partial genome.

29620 bp

124

31-JAN-2004

AY390556.1

C

SARS coronavirus GZ02, complete genome.

29760 bp

125

02-FEB-2004

AY443095.1

P

SARS coronavirus CUHK-L2 orf4 and orf3 genes, partial cds; small

673 bp

126

02-FEB-2004

AY443086.1

P

SARS coronavirus CUHK-L2 orf1ab polyprotein gene, partial cds.

673 bp

127

02-FEB-2004

AY443087.1

P

SARS coronavirus CUHK-L2 orf1ab polyprotein gene, partial cds.

678 bp

128

02-FEB-2004

AY443088.1

P

SARS coronavirus CUHK-L2 orf1ab polyprotein gene, partial cds.

3078 bp

129

02-FEB-2004

AY443089.1

P

SARS coronavirus CUHK-L2 orf1ab polyprotein gene, partial cds.

689 bp

130

02-FEB-2004

AY443090.1

P

SARS coronavirus CUHK-L2 orf1ab polyprotein gene, partial cds.

677 bp

131

02-FEB-2004

AY443091.1

P

SARS coronavirus CUHK-L2 orf1ab polyprotein gene, partial cds.

677 bp

132

02-FEB-2004

AY443092.1

P

SARS coronavirus CUHK-L2 orf1ab polyprotein gene, partial cds.

677 bp

133

02-FEB-2004

AY443093.1

P

SARS coronavirus CUHK-L2 spike glycoprotein gene, partial cds.

1143 bp

134

02-FEB-2004

AY443094.1

SARS coronavirus CUHK-L2 spike glycoprotein and orf3 genes, partial

325 bp

135

02-FEB-2004

AY443095.1

P

SARS coronavirus CUHK-L2 orf4 and orf3 genes, partial cds; small

3080 bp

136

06-FEB-2004

NC_004718.3

C

SARS coronavirus, complete genome.

29751 bp

137

09-FEB-2004

AY290752.2

C

SARS coronavirus ZJ01 isolate ZJ01b uncharacterized protein 6,

2810 bp

138

09-FEB-2004

AY286320.4

P

SARS coronavirus ZJ01, partial genome.

26333 bp

139

08-FEB-2004

AY525636.1

C

SARS coronavirus GD03T0013 spike glycoprotein gene, complete cds.

3768 bp

* C/P: Complete or partial?

(You may be also interested in reading about a NEJM article on Dr. Carlo Urbani and SARS.)

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(3) Multiple Sequence Alignment (MSA) of SARS virus genome sequences:
     
1. MSA result of 68 available SARS virus genome sequences as provided at:
   
    http://antisars.cbi.pku.edu.cn:5555/msa.jsp

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