Info on SARS Coronavirus Proteins

(1) Protein-coding genes: [web]
      (Note: based on GenBank accession: gi|30271926|ref|NC_004718.3| Canada isolate)
　

mA - pre-computed multiple alignment of coronavirus proteins;		3-D - pre-computed alignments of proteins with known 3-D struture
mA	- putative entire ORF product;	mA	- putative processing product (mature peptide)

Location	Length	Accession	Blink	Gene	BLAST	mA	3-D	Product
265.3398,13398..21485	7074	NP_828849	30124074	sars1	-	-	-	orf1ab polyprotein
265..801	179	NP_828860	29837495	sars1	-	-	-	putative leader protein
802..2718	639	NP_828861	29837496	sars1	-	-	-	putative counterpart of MHV p65 protein
2719..9984	2422	NP_828862	29837497	sars1	-	-	-	putative coronavirus nsp1
9985.0902	306	NP_828863	29837498	sars1	-			putative coronavirus nsp2 (3CL-PRO)
10903772	290	NP_828864	29837499	sars1	-		-	putative coronavirus nsp3 (HD2)
11773.2021	83	NP_828865	29837500	sars1	-		-	putative coronavirus nsp4
12022.2615	198	NP_828866	29837501	sars1	-		-	putative coronavirus nsp5
12616.2954	113	NP_828867	29837502	sars1	-		-	putative coronavirus nsp6
12955.3371	139	NP_828868	29837503	sars1	-		-	putative coronavirus nsp7
13372.3398,13398.6166	932	NP_828869	29837504	sars1	-			RNA-dependent RNA polymerase (RdRp)
16167.7969	601	NP_828870	29837505	sars1	-		-	putative coronavirus nsp10 (MB, NTPase/HEL)
17970.9550	527	NP_828871	29837506	sars1	-		-	putative coronavirus nsp11
19551..20588	346	NP_828872	29837507	sars1	-		-	putative coronavirus nsp12
20589..21482	298	NP_828873	30133975	sars1	-		-	putative coronavirus nsp13
265.3413	4383	NP_828850	29836495	sars1	-	-	-	orf1a polyprotein
21492..25259	1256	NP_828851	29836496	sars2	-	-	-	putative E2 glycoprotein precursor
25268..26092	275	NP_828852	30124073	sars3a	-	-	-	putative protein (sars3a)
25689..26153	155	NP_828853	29836498	sars3b	-	-	-	putative protein (sars3b)
26117..26347	77	NP_828854	29836499	sars4	-	-	-	putative small envelope protein E
26398..27063	222	NP_828855	29836504	sars5	-		-	putative protein M
27074..27265	64	NP_828856	29836500	sars6	-	-	-	putative protein (sars6)
27273..27641	123	NP_828857	29836501	sars7a	-	-	-	putative protein (sars7a)
27638..27772	45	NP_849175	30524940	sars7b	-	-	-	putative protein (sars7b)
27779..27898	40	NP_849176	30524941	sars8a	-	-	-	putative protein (sars8a)
27864..28118	85	NP_849177	30524942	sars8b	-	-	-	putative protein (sars8b)
28120..29388	423	NP_828858	29836503	sars9a	-	-	-	putative nucleocapsid protein N
28130..28426	99	NP_828859	29836502	sars9b	-	-	-	putative protein (sars9b)

(2) Clickable SARS coronavirus protein map: [web]